General information
Organisation
The French Alternative Energies and Atomic Energy Commission (CEA) is a key player in research, development and innovation in four main areas :
• defence and security,
• nuclear energy (fission and fusion),
• technological research for industry,
• fundamental research in the physical sciences and life sciences.
Drawing on its widely acknowledged expertise, and thanks to its 16000 technicians, engineers, researchers and staff, the CEA actively participates in collaborative projects with a large number of academic and industrial partners.
The CEA is established in ten centers spread throughout France
Reference
SL-DRT-26-0516
Direction
DRT
Thesis topic details
Category
Technological challenges
Thesis topics
Fluctuations microscopy for functional imaging of organoids
Contract
Thèse
Job description
Phase contrast microscopy and fluorescence microscopy are the two pillars of modern biological imaging. Phase contrast reveals the morphology of the sample, while fluorescent labeling provides specificity to the process of interest. In both cases, the image is the average value of the measured signal. In this thesis, we propose to focus not on the average value, but on the fluctuations observed in phase contrast. This new contrast will be called Fluctuations Imaging. The fluctuations arise from the active and passive transport phenomena that characterize cellular machinery, and it can be assumed that the level of fluctuations is correlated with cellular activity. The objective of the thesis is to detect phase contrast fluctuations, quantify them, and link them to a process of interest using machine learning methods. The object of study will be lymphocyte activation, which is a critical parameter for monitoring rejection in certain patients with type 1 diabetes who have undergone islet transplantation. Fluctuations Imaging would enable tracking without labeling, simplifying the monitoring protocol. The expected work is (i) optimizing a phase contrast microscope to detect fluctuations, (ii) analyzing image sequences to quantify them, and (iii) implementing the developed method on various biological models, some of which will be pancreas-on-a-chip organs. This thesis, at the intersection of instrumentation, biophysics, and biology, is intended for a student with a background in optics, physics, or equivalent, with a good knowledge of image processing and a strong interest in applications in biology and health.
University / doctoral school
Thesis topic location
Site
Grenoble
Requester
Position start date
01/10/2026
Person to be contacted by the applicant
BARITAUX Jean-Charles
jean-charles.baritaux@cea.fr
CEA
DRT/DTIS//L4IV
17 Avenue des Martyrs, 38000 Grenoble
+33 438 78 15 63
Tutor / Responsible thesis director
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