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Study of the links between the dysregulations of metabolism and epigenetics marks in Huntington’s diseas


Thesis topic details

General information

Organisation

The French Alternative Energies and Atomic Energy Commission (CEA) is a key player in research, development and innovation in four main areas :
• defence and security,
• nuclear energy (fission and fusion),
• technological research for industry,
• fundamental research in the physical sciences and life sciences.

Drawing on its widely acknowledged expertise, and thanks to its 16000 technicians, engineers, researchers and staff, the CEA actively participates in collaborative projects with a large number of academic and industrial partners.

The CEA is established in ten centers spread throughout France
  

Reference

SL-DRF-25-0065  

Direction

DRF

Thesis topic details

Category

Life Sciences

Thesis topics

Study of the links between the dysregulations of metabolism and epigenetics marks in Huntington’s disease

Contract

Thèse

Job description

We want to focus on epigenetic dysregulation in Huntington’s Disease (HD), a pathogenic mechanism implicated in accelerated aging of striatal neurons. Specifically, we will investigate the interplay between altered energy metabolism and epigenetic impairment in HD striatal neurons to identify new targets/pathways for disease-modifying intervention. We aim to obtain detailed maps of histone post-translational modifications (PTMs), especially of methylations, acetylation and the recently described lactylation, which might be critical in the HD brain. Indeed, these PTMs are tightly regulated by the metabolic status of the cells. We will use proteomics which is the best suited approach to identify and quantify multiple protein PTMs. We consider working on the striatum of WT, R6/1 transgenic mice and the more progressive Q140 knock in model at various stages of disease, to assess evolution of histone PTMs and metabolism with aging. Additionally, to get a dynamic view of the links between metabolic and epigenetic imbalance in HD, we will inject intraperitoneally HD mice and controls with 13C-glucose and analyze over a time course the incorporation of 13C into histone PTMs. Finally, acetyl-CoA, the precursor for histone lysine acetylation, has been shown to be locally produced in the nucleus, by either acetyl-CoA synthetase 2 (ACSS2), ATP-citrate lyase (ACLY) or the pyruvate dehydrogenase complex. Regarding lactylation, it is currently unknown where, and by which enzymes, the pool of lactate used for modifying histone lysines by lactylation is produced. ACSS2 is a very good candidate, as it can catalyze the production of acyl-CoA molecules from the corresponding short chain fatty acids (SCFA). To address the question of the production of metabolites in the vicinity of chromatin in striatal cells, we will use epigenomics (ChIPseq or CUT&tag) to get the genomic distribution of ACSS2 and ACLY and compare it to distributions of acetyl and lactyl histone marks.

University / doctoral school

Chimie et Sciences du Vivant (EDCSV)
Université Grenoble Alpes

Thesis topic location

Site

Grenoble

Requester

Position start date

01/12/2024

Person to be contacted by the applicant

PFLIEGER Delphine delphine.pflieger@cea.fr
CNRS
UA13 Inserm/CEA/Université Grenoble Alpes
EDYP/BGE/DS/IRIG
CEA de Grenoble
17 rue des Martyrs
38054 GRENOBLE cedex 09
0438782265

Tutor / Responsible thesis director

PFLIEGER Delphine delphine.pflieger@cea.fr
CNRS
UA13 Inserm/CEA/Université Grenoble Alpes
EDYP/BGE/DS/IRIG
CEA de Grenoble
17 rue des Martyrs
38054 GRENOBLE cedex 09
0438782265

En savoir plus

https://www.edyp.fr/web/2019/10/22/integrative-omics/
https://www.edyp.fr/web/research-activity/